PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145538.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 359aa    MW: 40615.9 Da    PI: 6.8525
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145538.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.4e-05199218120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  XP_009145538.1 199 FSCPLCYKTFNRYNNMQMHM 218
                     89*****************9 PP

2zf-C2H212.90.00032283305123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C  Cgk F  k + ++H +++
  XP_009145538.1 283 FACRRCGKAFAVKGDWRTHEKNC 305
                     78*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.21E-5194222No hitNo description
Gene3DG3DSA:3.30.160.603.7E-5199218IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.201199226IPR007087Zinc finger, C2H2
PROSITE patternPS000280201221IPR007087Zinc finger, C2H2
SuperFamilySSF576673.2E-6269303No hitNo description
Gene3DG3DSA:3.30.160.609.0E-6270303IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767283303IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSDPACIFNN GVVDGYDYSF NYSTSLSHIY NSNGSFYYPR NTTDINPNST LPESPPLREA  60
LPLLSLSPIH KQKEDIVPQH EYYFMETTEN SSNSNFLNHN LDQCQESTHH YDVTVDLHLG  120
LPNPGGDAIG YGGGGSSSSD VILDSTDQEH HQDRHQYHGV EVTLASDHHH DGHGGVQRGI  180
HNHYWIPTPS QILMGPTQFS CPLCYKTFNR YNNMQMHMWG HGSEYRKGPE SLRGTQPTGM  240
LKLPCYCCAP GCKNNIEHPR ARPLKDFRTL QTHYKRKHGA RPFACRRCGK AFAVKGDWRT  300
HEKNCGRLWY CSCGSDFKHK RSLKDHVKAF GNGHVPCFGI DCFGDHEDEE AASDVEQQE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118110.0AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145538.10.0PREDICTED: protein TRANSPARENT TESTA 1
SwissprotQ8W0300.0ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLM4ER160.0M4ER16_BRARP; Uncharacterized protein
STRINGBra031239.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.10.0WIP domain protein 4